Synthesis of the Potent, Selective, and Efficacious β-Secretase (BACE1) Inhibitor NB-360

J Med Chem. 2021 Apr 22;64(8):4677-4696. doi: 10.1021/acs.jmedchem.0c02143. Epub 2021 Apr 12.

Abstract

Starting from lead compound 4, the 1,4-oxazine headgroup was optimized to improve potency and brain penetration. Focusing at the 6-position of the 5-amino-1,4-oxazine, the insertion of a Me and a CF3 group delivered an excellent pharmacological profile with a pKa of 7.1 and a very low P-gp efflux ratio enabling high central nervous system (CNS) penetration and exposure. Various synthetic routes to access BACE1 inhibitors bearing a 5-amino-6-methyl-6-(trifluoromethyl)-1,4-oxazine headgroup were investigated. Subsequent optimization of the P3 fragment provided the highly potent N-(3-((3R,6R)-5-amino-3,6-dimethyl-6-(trifluoromethyl)-3,6-dihydro-2H-1,4-oxazin-3-yl)-4-fluorophenyl)-5-cyano-3-methylpicolinamide 54 (NB-360), able to reduce significantly Aβ levels in mice, rats, and dogs in acute and chronic treatment regimens.

MeSH terms

  • Alzheimer Disease / drug therapy
  • Amyloid Precursor Protein Secretases / antagonists & inhibitors
  • Amyloid Precursor Protein Secretases / metabolism*
  • Amyloid beta-Peptides / metabolism
  • Animals
  • Aspartic Acid Endopeptidases / antagonists & inhibitors
  • Aspartic Acid Endopeptidases / metabolism
  • Binding Sites
  • Brain / metabolism
  • Crystallography, X-Ray
  • Dogs
  • Enzyme Inhibitors / chemical synthesis*
  • Enzyme Inhibitors / metabolism
  • Enzyme Inhibitors / therapeutic use
  • Half-Life
  • Humans
  • Mice
  • Molecular Dynamics Simulation
  • Oxazines / chemistry
  • Picolinic Acids / chemical synthesis*
  • Picolinic Acids / pharmacokinetics
  • Picolinic Acids / therapeutic use
  • Rats
  • Structure-Activity Relationship
  • Thiazines / chemical synthesis*
  • Thiazines / pharmacokinetics
  • Thiazines / therapeutic use

Substances

  • Amyloid beta-Peptides
  • Enzyme Inhibitors
  • NB-360
  • Oxazines
  • Picolinic Acids
  • Thiazines
  • Amyloid Precursor Protein Secretases
  • Aspartic Acid Endopeptidases
  • BACE2 protein, human
  • BACE1 protein, human